When you chop an onion, you break open some of the onion's cells. This releases enzymes which take part in complex biochemical reactions.
One of these reactions on allicin (2-Propene-1-sulfinothioic acid S-2-propenyl ester, (C6H10OS2) produces a substance called propenyl sulphuric acid. This is very volatile and also an irritant.
It ‘fumes’ up from the onion and irritates your eyes, which produce
tears to wash away the irritant and protect themselves.
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